Open Positions

We are working on several exciting projects in the general area of systems biology and time series expression analysis. Most of our work is in collaboration with leading biological labs. Many of the computational tools we develop are publicly available and some are currently used by hundreds of researchers around the world. We are looking for new individuals to join our group. Specifically:


Ziv Bar-Joseph
Principal Investigator
zivbj "at"
Tel: 412-268 8595

Allyson Ricarte
HuBMAP project manager
aricarte "at"
Tel: 412-268-4206
Fax: 412-268-2977

Matthew Ruffalo
Systems Scientist, CBD
mruffalo "at"

Siwei Xu
Software engineer
siweixu "at"

Nikhil Swaminathan
Research Software Engineer
nswamin1 "at"

Monica Dayao
PhD student, CBD
mdayao "at"

Haotian Teng
PhD student, CBD
haotiant "at"

Nam Nguyen
Lane Fellow (Postdoc)
namn "at"

Dongshunyi Li
PhD Student (CBD)
dongshul "at"


Sean Donahue
Research Programmer (HuBMAP)
seandona "at"

Alex (Qi) Song
Postdoc (Postdoc)
qisong "at"

Past Group Members

Saket Navlakha
Associate Professor
Cold Spring Harbor Laboratory

Anthony Gitter
Assistant Professor
University of Wisconsin-Madison

Xin He
Assistant Professor
University of Chicago

Marcel Schulz
Frankfurt University

Hai-Son Le
Sunrise Futures LLC

Shan Zhong
Principal Scientist

Guy Zinman
Director of Life Sciences at SparkBeyond

Yanjun Qi
Associate Professor
UVA Computer Science

Henry (Tienho) Lin
Senior Data Scientist

Yong Lu
Staff Scientist

Jason Ernst
Associate Professor

Yanxin Shi

Ercument Cicek
Assistant Professor
Bilkent University

Aaron Wise
Director of Bioinformatics

Yan Xia

Siddhartha Jain
Applied Scientist

Mondira Ray
MD Resident
Seattle Children's Hospital

Sabrina Rashid
Sr. Deep Learning/AI Engineer

Hamim Zafar
Assistant Professor
IIT Kanpur

Jun Ding
Assistant Professor
McGill University

Ye Yuan
Assistant Prof.
Shanghai Jiao Tong University

Jose Lugo-Martinez
Assistant Prof. The University of Puerto Rico, Mayaguez (UPRM)

Amir Alavi
ML Scientist, Seer