Open Positions
We are working on several exciting projects in the general area of systems biology and time series expression analysis. Most of our work is in collaboration with leading biological labs. Many of the computational tools we develop are publicly available and some are currently used by hundreds of researchers around the world. We are looking for new individuals to join our group. Specifically:
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We are looking for postdocs to join our group in September 2020. We are collaborating with several experimental groups on a number of new exciting projects including the analysis of genomics single cell data, modeling of developmental and response networks and using epigenetic data to infer genome wide interactions. Applicants should email a CV and the names of two potential references to Ziv Bar-Joseph.
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A postdoc fellow position is available through the Lane Fellows in Computational Biology. Applications are due in the Fall. Please email Ziv Bar-Joseph for more details.
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An entering or current graduate student in the School of Computer Science at CMU, and you are interested in finding out more about the research within our group, please email Ziv Bar-Joseph (see Contacts page).
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An undergraduate student at CMU and you are looking for a project which combines scientific discovery and real world tool development, please contact Ziv Bar-Joseph as well.
People
Ziv Bar-Joseph
Principal Investigator
zivbj "at" cs.cmu.edu
Tel: 412-268 8595
Allyson Ricarte
HuBMAP project manager
aricarte "at" andrew.cmu.edu
Tel: 412-268-4206
Fax: 412-268-2977
Matthew Ruffalo
Systems Scientist, CBD
mruffalo "at" andrew.cmu.edu
Siwei Xu
Software engineer
siweixu "at" andrew.cmu.edu
Nikhil Swaminathan
Research Software Engineer
nswamin1 "at" Andrew.cmu.edu
Monica Dayao
PhD student, CBD
mdayao "at" andrew.cmu.edu
Haotian Teng
PhD student, CBD
haotiant "at" andrew.cmu.edu
Nam Nguyen
Lane Fellow (Postdoc)
namn "at" andrew.cmu.edu
Dongshunyi Li
PhD Student (CBD)
dongshul "at" andrew.cmu.edu
Sean Donahue
Research Programmer (HuBMAP)
seandona "at" andrew.cmu.edu
Alex (Qi) Song
Postdoc (Postdoc)
qisong "at" andrew.cmu.edu
Past Group Members
Saket Navlakha
Associate Professor
Cold Spring Harbor Laboratory
Anthony Gitter
Assistant Professor
University of Wisconsin-Madison
Xin He
Assistant Professor
University of Chicago
Marcel Schulz
Professor
Frankfurt University
Hai-Son Le
Analyst
Sunrise Futures LLC
Shan Zhong
Principal Scientist
GSK
Guy Zinman
Director of Life Sciences at SparkBeyond
Yanjun Qi
Associate Professor
UVA Computer Science
Henry (Tienho) Lin
Senior Data Scientist
Avetta
Ercument Cicek
Assistant Professor
Bilkent University
Aaron Wise
Director of Bioinformatics
Encodia
Yan Xia
Facebook
Siddhartha Jain
Applied Scientist
Amazon
Mondira Ray
MD Resident
Seattle Children's Hospital
Sabrina Rashid
Sr. Deep Learning/AI Engineer
Illumina
Hamim Zafar
Assistant Professor
IIT Kanpur
Jun Ding
Assistant Professor
McGill University
Ye Yuan
Assistant Prof.
Shanghai Jiao Tong University
Chieh
(Jessica) Lin
Google
Jose Lugo-Martinez
Assistant Prof. The University of Puerto Rico, Mayaguez (UPRM)
Amir Alavi
ML Scientist, Seer