Linking the Signaling Cascades and Dynamic Regulatory Networks Controlling Stress Responses

Short osmotic stress model

The images below show a network view of which TFs are active at each time point in the short osmotic stress model. Green nodes are TFs, red nodes are sources, and blue nodes are other predicted osmotic stress pathway members. The images correspond to the regulatory path splits at 0, 2, 4, 6, and 8 minutes.
Short osmotic stress model, TFs active at 0 min time point Short osmotic stress model, TFs active at 2 min time point Short osmotic stress model, TFs active at 4 min time point Short osmotic stress model, TFs active at 6 min time point Short osmotic stress model, TFs active at 8 min time point
The Cytoscape network files used to generate the above figures and the short osmotic stress model network in the main text are available here. The *.noa files describe which TFs are active and shortHog.sif specifies the protein-protein and protein-DNA interactions.

Long osmotic stress model

The images below show a network view of which TFs are active at each time point in the long osmotic stress model. The images correspond to the regulatory path splits at 0, 5, 15, 30, and 45 minutes.
Long osmotic stress model, TFs active at 0 min time point Long osmotic stress model, TFs active at 5 min time point Long osmotic stress model, TFs active at 15 min time point Long osmotic stress model, TFs active at 30 min time point Long osmotic stress model, TFs active at 45 min time point
The Cytoscape network files used to generate the above figures and the long osmotic stress model network in the main text are available here.

TOR model

The images below show a network view of which TFs are active at each time point in the TOR model. The images correspond to the regulatory path splits at 0, 20, 30, 60, and 90 minutes.
TOR model, TFs active at 0 min time point TOR model, TFs active at 20 min time point TOR model, TFs active at 30 min time point TOR model, TFs active at 60 min time point TOR model, TFs active at 90 min time point
The Cytoscape network files used to generate the above figures and the TOR model network in the Supplementary Results are available here.

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