Version 1.2 released 7/3/2013 * Include node priors when calculating path weight * Generate Cytoscape v2.8 files to visualize high-confidence pathways * Predict single and double knockdown effects * Fix bug in TF activity priors update discovered by Siddhartha Jain * Fix bug in node score calculation for vertices whose names contain underscores discovered by Siddhartha Jain * Remove species-specific test code Version 1.1 released 12/28/2012 * Can use StorePaths.jar to precompute and store paths in the network * Parallelized parts of SDREM to leverage machines with multiple processors * Support enumeration and analysis of only the highest weight paths * Store all satisfied paths at each iteration * Consolidate all licenses into license.txt Version 1.0 released 3/21/2011 * Baseline code release