Lists of genes (using blattner numbers) used in the validation sets
for the results of Figure 3 of the paper. Genes appearing in
these list satisfy the following criteria:
Are among the set of 4205 genes for which predictions were made.
Does not have direct evidence of being regulated by the TF curated
into EcoCyc 11.5.
Appears in a list of ChIP-chip targets in the cited paper or shares a
transcriptional unit
assignment in RegulonDB 5.7 with such a gene.
CRP
(Grainger et al., Proc Natl Acad Sci 2005; PubMed:
1308901)
Fis
(Grainger et al., Nucleic Acids Res 2006; PubMed:
16963779)
FNR (Grainger et al., Nucleic Acids Res 2007; PubMed: 1802558)
H-NS
(Oshima et al., DNA Res 2006; PubMed:
17046956)
IHF
(Grainger et al., Nucleic Acids Res 2006; PubMed:
16963779)
|