Stamp Results


Jump to: Multiple Alignment Motif Tree Motif Matching
Input file: 10 motifs loaded
Settings: Metric=PCC, Alignment=SWU, Gap-open=1000, Gap-extend=1000, -nooverlapalign
Multiple Alignment=IR, Tree=UPGMA, Matching against: TRANSFAC
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Multiple Alignment
(Consensus sequence representations shown, but multiple alignment was carried out on the matrices)
DME9: --AWGAAAAA--
DME14: ---AGRAGCTG-
DME23: --AAGANGAA--
DME29: -AGAGAAAR---
DME80: GAMAGCAG----
DME38: -TGGGAAAR---
DME54: CTCACATW----
DME64: GGAAGAAG----
DME61: --CARCAGCA--
DME2: ----GAAAAAWG

Familial Profile:
(click for matrix)


Motif Tree

Tree (drawn by Phylip)
Click here for Newick-format tree (viewable with MEGA)
Input MotifBest match in TRANSFAC

DME9

Helios_M01004
(E val: 1.3019e-06)

DME23

Elf-1_M00746
(E val: 3.8950e-08)

DME64

PEND_M01015
(E val: 6.7563e-07)

DME2

MCM1+SFF_M01051
(E val: 4.5626e-08)

DME29

Elf-1_M00746
(E val: 1.9017e-06)

DME38

Lyf-1_M00141
(E val: 1.4081e-06)

DME14

LUN-1_M00480
(E val: 2.7524e-05)

DME80

LMAF_M01139
(E val: 1.7859e-06)

DME61

HEB_M00698
(E val: 5.7586e-06)

DME54

MIG1_M00061
(E val: 4.5981e-05)


Motif Similarity Matches

DME9
forward

reverse compliment

 NameE value
Alignment
Motif
Helios_M010041.3019e-06
-TTTTTCWT-
NTTTTCCTWN
Rim101p_M010301.4515e-05
TTTTTCWT-
--TTNCTTG
dl_M000431.7481e-05
AWGAAAAA--
NGGAAAAACC
AG_M011338.1139e-05
--------AWGAAAAA
TWNCAAAAAWGGNAAN
Evi-1_M000111.0421e-04
TTTTTCWT-
-TTATCTTG



DME23
forward

reverse compliment

 NameE value
Alignment
Motif
Elf-1_M007463.8950e-08
--TTCNTCTT-
AYTTCCTCTTN
PEND_M010152.0893e-06
AAGANGAA
AAGAAGT-
XPF-1_M006842.3251e-05
-TTCNTCTT
GKTSNYCNG
PU.1_M006584.0255e-05
-TTCNTCTT
CTTCCTC--
dTCF_M003621.0869e-04
AAGANGAA--
AAGATCAAAG



DME64
forward

reverse compliment

 NameE value
Alignment
Motif
PEND_M010156.7563e-07
GGAAGAAG-
--AAGAAGT
PU.1_M006584.4447e-06
GGAAGAAG
-GAGGAAG
Nrf-2_M001083.3753e-05
CTTCTTCC--
-SNCTTCCGG
Tel-2_M006781.3516e-04
--GGAAGAAG
CAGGAAGTA-
GCR1_M000463.2595e-04
GGAAGAAG-
-GWGGAAGC



DME2
forward

reverse compliment

 NameE value
Alignment
Motif
MCM1+SFF_M010514.5626e-08
-------CWTTTTTC-----------
TTRTTTANNTWTTNCCNNWTTNGGNA
MADS-A_M004081.4529e-06
----CWTTTTTC---
TTTCCATTTTTNNWN
AG_M011331.4630e-06
---GAAAAAWG-----
TWNCAAAAAWGGNAAN
MADS-B_M004042.0101e-06
----CWTTTTTC--
TTTSCATTTTTRGN
dl_M000431.7481e-05
CWTTTTTC--
GGTTTTTCCN



DME29
forward

reverse compliment

 NameE value
Alignment
Motif
Elf-1_M007461.9017e-06
-YTTTCTCT--
AYTTCCTCTTN
BPC1_M011265.4962e-06
YTTTCTCT
NTTTC---
dl_M001205.3535e-05
---YTTTCTCT
NGNTTTTCYC-
IRF_M009726.0236e-05
YTTTCTCT--
NTTTCWNTTT
GAGA_M007236.0958e-05
-AGAGAAAR-
SWGAGMGNRA



DME38
forward

reverse compliment

 NameE value
Alignment
Motif
Lyf-1_M001411.4081e-06
YTTTCCCA-
-YCTCCCAA
BPC1_M011264.3072e-06
YTTTCCCA
NTTTC---
RBP-Jkappa_M011129.2263e-06
YTTTCCCA---
-KTTCCCACGN
STAT1_M004921.7823e-05
TGGGAAAR
-SGGAANT
ISGF-3_M002582.0473e-05
TGGGAAAR-------
-GNGAAANWGAAACT



DME14
forward

reverse compliment

 NameE value
Alignment
Motif
LUN-1_M004802.7524e-05
------AGRAGCTG--
TCCCAAAGTAGCTGGG
LBP-1_M006443.6468e-05
-CAGCTYCT
SCAGCN---
Barbie_M002383.6633e-05
----CAGCTYCT--
CMNNCNSCTTTNNN
TAL1_M009935.9146e-05
AGRAGCTG-
RNCAGNTGG
AP-4_M009271.0269e-04
AGRAGCTG-
-RCAGCTGN



DME80
forward

reverse compliment

 NameE value
Alignment
Motif
LMAF_M011391.7859e-06
GAMAGCAG
STCAGCAG
Barbie_M002382.8352e-05
----CTGCTKTC--
CMNNCNSCTTTNNN
HEB_M006982.9896e-05
GAMAGCAG-
--CAGCWGG
BPC1_M011261.3462e-04
CTGCTKTC
---NTTTC
Grainyhead-Elf-1-NTF-1_M009511.3798e-04
GAMAGCAG
-AAACCRG



DME61
forward

reverse compliment

 NameE value
Alignment
Motif
HEB_M006985.7586e-06
TGCTGYTG
-CCWGCTG
AP-4_M009278.8817e-06
TGCTGYTG-
-RCAGCTGN
myogenin_M007121.6420e-05
CARCAGCA
CASCTGN-
LMAF_M011393.7144e-05
TGCTGYTG--
--CTGCTGAS
NRSF_M010281.2170e-04
---------TGCTGYTG-
YNCTGTCCRYGGTGCTGA



DME54
forward

reverse compliment

 NameE value
Alignment
Motif
MIG1_M000614.5981e-05
-----WATGTGAG---
NNWWAAANSYGGGGNN
CRP_M002029.9093e-05
-------------CTCACATW----
WANTGTGANNYNNNTCACAWTWATT
TFE_M010293.5993e-04
CTCACATW
-NCACATG
IRF-1_M007474.0444e-04
WATGTGAG
-AANTGA-
IRF_M009726.0513e-04
--CTCACATW
NTTTCWNTTT



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STAMP is written by Shaun Mahony